R packages, tools, and apps I build and maintain.
From CRAN packages for genomic data to Shiny apps for exploring chickpea pangenome data — code written to make plant genomics analysis more reproducible.
Published, peer-reviewed R packages
refseqR
A framework of common computational operations working with RefSeq entries (GenBank). Provides summary information at three levels: gene, transcript, and protein sequences.
airqualityES
Daily air quality measurements in Spain over 18 years (2001–2018), across several pollutants. Openly published by the Government of Spain, tidied into a single dataframe for researchers, journalists, or the general public.
Gene family & genome resources
GeneHummus
An automated pipeline with high specificity and sensitivity in extracting proteins from the RefSeq database (NCBI) based on protein domain organization. Useful for plant gene family characterization, phylogenetic construction, or gene expression profiling.
Full genome sequences
Full genome sequences stored in Biostrings objects, installable from Bioconductor.
Standalone tools
hIndexOveryears
An R package to get a graphical representation of your h-index over the years.
optimalPlan
Identifies the optimal sampling plan for a qPCR experiment within a given budget, allocating replicates (RNA, cDNA, qPCR) where they're expected to have the greatest benefit.