Jose V. Die

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Education

• 2009 Ph.D. Plant Genetics. Cum laude honors. University of Cordoba. Córdoba, Spain.

• 2003 Agronomic Engineering, Biotechnology and Breeding. Polytechnic University of Valencia. Valencia, Spain. Diploma Thesis in Institut für Planzenbau and Pflanzenzüchtung. Georg-August-Universität, Göttingen, Germany.

Projects

• Programa Operativo FEDER 2014-2020. Integración de herramientas genéticas y genómicas para el estudio del carácter fecha de floración en el cultivo del garbanzo. PI: Jose V. Die. Junta de Andalucía. Budget: 23.953,00€ (2020-2021).

• FORCE – Molecular basis underlying the QTL responsible for the genetic control of flowering time in chickpea: an integrative approach (H2020-MSCA-IF-2018). Projet ID: 844431, PI: Jose V. Die. European Comission, 160,932.48€, 2018-2020.

Transcriptomic & Bioinformatics Training

• Workshop on Transcriptomics and Bioinformatics. Center for Biotechnology, University of Bielefeld. Bielefeld, Germany. Nov 2004.

• Rethink the way you do real-time PCR. Bio-Rad. Málaga, Spain. Jun 2008

• Real-time PCR Course. TATAA Biocenter. Freising, Germany. Nov 2008

• Genomics & Bioinformatics COMAV’s Group:

  • Bioinformatics: introduction to sequence analysis. 1st edition. Universidad Politécnica de Madrid. Madrid, Spain. Sept 2011
  • NGS Sequence Analysis. 13th edition. Universidad Politécnica de Valencia, Valencia, Spain. Dec 2017

• I Curso Nacional de Genómica (0) “From DNA to Annotated Genomes” (Sociedad Española de Genética). La Cristalera, Miraflores de la Sierra, Madrid. Jun 2024.

• Massachusetts Institute of Technology, MITx.

  • 6.00.1x Introduction to Computer Science and Programming. Oct-Dec 2013
  • 6.00.2x Introduction to Computational Thinking and Data Science. Oct-Dec 2014

• NCBI-USDA Workshop. Nov 2014

• HarvardX Data Analysis for Genomics series:

  • PH525.1x Statistics and R for the Life Sciences. Jan-Feb 2015
  • PH525.2x Matrix Algebra and Linear Models. Feb 2015
  • PH525.3x Advanced Statistics for the Life Sciences. Mar 2015
  • PH525.4x Introduction to Bioconductor. Apr 2015
  • PH525.5x Case Study: RNA-seq data analysis. May 2015

• Johns Hopkins University. Data Science Specialization. Coursera:

  • The Data Scientist’s Toolbox. Jul 2015
  • R Programming. Jun 2015
  • Getting and Cleaning Data. Jul 2015
  • Exploratory Data Analysis. Aug 2015
  • Reproducible Research. Sep 2015
  • Statistical Inference. Feb 2016

• Johns Hopkins University. Genomic Data Science Specialization. Coursera:

  • Introduction to Genomic Technologies. Dec 2015
  • Python for Genomic Data Science. Aug 2015
  • Algorithms for DNA sequencing. Apr 2016
  • Bioconductor for Genomic Data Science. Sep 2015

• HarvardX. PH526x Using Python for Research. Jun 2017  

• Johns Hopkins University. The Unix Workbench Jan 2018.

Bioethics

• Georgetown University. phlx101-01 Introduction to Bioethics. GeorgetownX. Apr-Jun 2014

Scientific Societies

• Sociedad Española de Bioinformática y Biología Computacional (2021 - present)
• American Society of Plant Biologists (2015 - present)
• The American Phytopathological Society (2015 - present)
• Sociedad Española de Bioquímica y Biología Molecular (2014 - present)
• Sociedad Española de Genética (2008 - present)

Honors and Awards

• Seal of Excellence. 2017. Marie Sklodowska-Curie actions call H2020-MSCA-IF-2017. European Comission
• Extraordinary Doctorate Award. 2011. University of Cordoba. Córdoba, Spain
• European Doctor Mention. 2009. University of Cordoba. Córdoba, Spain

Editorial roles

• Senior academic editor in the journal HORTICULTURAE. Section “Genetics, Genomics, Breeding, and Biotechnology”.

• Guest Associate Editor: Frontiers in bioinformatics (Jun 2023). Research Topic : Widely applicable biological data science algorithms across the fields of genomics, clinical science, agriculture and drug design
• Guest Associate Editor: Horticulturae (Jun 2023). Special issue : Advances in Asparagus Production, Genomics and Breeding
• Guest Associate Editor: Frontiers in Plant Science (Mar 2023). Research Topic : Advances in Conservation, Characterization, and Use of Asparagus Genetic Resources
• Guest Associate Editor, Frontiers in Genetics (Jan 2021)
• Guest Associate Editor, Plants (Oct 2021) Special issue : Development and Application of Advanced Genetics Methods to Orphan Crops

Peer-review Services

• Agronomy
• Annals of Applied Biology
• BMC Genomics
• BMC Molecular Biology
• BMC Plant Biology
• Cytogenetic and Genome Research
• Ecotoxicology
• Evolutionary Bioinformatics
• Forests
• Frontiers in Plant Science
• Gene
• Genetica
• Genes
• Genome
• Horticultural Science & Biotechnology
• International Journal of Molecular Sciences
• Journal of the American Society for Horticultural Science
• Journal of Experimental Botany
• Journal of Plant Physiology
• Microorganisms
• Molecular Biology Reports
• Molecules
• PeerJ
• Phytopathologia Mediterranea
• Plant Methods
• Plant Molecular Biology Reporter
• Plant Physiology and Biochemistry
• Planta
• PLos ONE
• Scientific Reports
• Weed Research

More information on peer-review.

Contact

The best way to contact me is by email.