JOSE V. DIE Contact
Curriculum Vitae

Education, funding, training, and service.

The full record behind the research: degrees, grants I've led, the courses that shaped how I work with data, and the journals and societies I contribute to.

Education Projects Training Societies Honors Editorial Peer review Contact
Education

Degrees

Projects

Grants as Principal Investigator

  • 2023–2026 — Proyectos de Generación de Conocimiento, Convocatoria 2022. "Development and evaluation of pre-breeding populations and use of genomic tools for Asparagus breeding." Ref: PID2022-142876OB-I00. Ministerio de Ciencia e Innovación. PI1: P. Castro, PI2: Jose V. Die. 1 Sep 2023 – 31 Aug 2026. Budget: €175,000.
  • 2023–2025 — Proyecto Excelencia, Convocatoria 2021. "Desarrollo y aplicación de herramientas genómicas para selección de individuos tolerantes a sequía en castaño." Junta de Andalucía. PI: Jose V. Die. 1 Jan 2023 – 31 Dec 2025. Budget: €137,000.
  • 2020–2021 — Programa Operativo FEDER 2014-2020. "Integración de herramientas genéticas y genómicas para el estudio del carácter fecha de floración en el cultivo del garbanzo." PI: Jose V. Die. Junta de Andalucía. Budget: 23.953,00€.
  • 2018–2020 — FORCE — Molecular basis underlying the QTL responsible for the genetic control of flowering time in chickpea: an integrative approach (H2020-MSCA-IF-2018). Project ID: 844431. PI: Jose V. Die. European Commission, €160,932.48.
Training

Transcriptomic & Bioinformatics Training

  • 2004 — Workshop on Transcriptomics and Bioinformatics. Center for Biotechnology, University of Bielefeld. Bielefeld, Germany.
  • 2008 — Rethink the way you do real-time PCR. Bio-Rad. Málaga, Spain.
  • 2008 — Real-time PCR Course. TATAA Biocenter. Freising, Germany.
  • 2011 / 2017 — Genomics & Bioinformatics, COMAV's Group: Bioinformatics — introduction to sequence analysis (1st ed.), Universidad Politécnica de Madrid; NGS Sequence Analysis (13th ed.), Universidad Politécnica de Valencia.
  • 2024 — I Curso Nacional de Genómica "From DNA to Annotated Genomes" (Sociedad Española de Genética). La Cristalera, Miraflores de la Sierra, Madrid.
  • 2014 — NCBI-USDA Workshop.

Massachusetts Institute of Technology — MITx

  • 6.00.1x Introduction to Computer Science and Programming. Oct–Dec 2013
  • 6.00.2x Introduction to Computational Thinking and Data Science. Oct–Dec 2014

HarvardX — Data Analysis for Genomics series

  • PH525.1x Statistics and R for the Life Sciences. Jan–Feb 2015
  • PH525.2x Matrix Algebra and Linear Models. Feb 2015
  • PH525.3x Advanced Statistics for the Life Sciences. Mar 2015
  • PH525.4x Introduction to Bioconductor. Apr 2015
  • PH525.5x Case Study: RNA-seq data analysis. May 2015
  • PH526x Using Python for Research. Jun 2017

Johns Hopkins University — Data Science Specialization (Coursera)

  • The Data Scientist's Toolbox. Jul 2015
  • R Programming. Jun 2015
  • Getting and Cleaning Data. Jul 2015
  • Exploratory Data Analysis. Aug 2015
  • Reproducible Research. Sep 2015
  • Statistical Inference. Feb 2016
  • The Unix Workbench. Jan 2018

Johns Hopkins University — Genomic Data Science Specialization (Coursera)

  • Introduction to Genomic Technologies. Dec 2015
  • Python for Genomic Data Science. Aug 2015
  • Algorithms for DNA Sequencing. Apr 2016
  • Bioconductor for Genomic Data Science. Sep 2015
Bioethics

Ethics training

  • 2014 — Georgetown University. Introduction to Bioethics (phlx101-01). GeorgetownX. Apr–Jun 2014.
Scientific societies

Memberships

  • Sociedad Española de Bioinformática y Biología Computacional (2021–present)
  • American Society of Plant Biologists (2015–present)
  • The American Phytopathological Society (2015–present)
  • Sociedad Española de Bioquímica y Biología Molecular (2014–present)
  • Sociedad Española de Genética (2008–present)
Honors & awards

Recognition

  • 2017 — Seal of Excellence. Marie Skłodowska-Curie actions call H2020-MSCA-IF-2017. European Commission.
  • 2011 — Extraordinary Doctorate Award. University of Córdoba. Córdoba, Spain.
  • 2009 — European Doctor Mention. University of Córdoba. Córdoba, Spain.
Editorial roles

Academic editing

Editorial Board Member
BMC Genomics
Ongoing
Senior Academic Editor
Horticulturae — Genetics, Genomics, Breeding & Biotechnology
Ongoing
Guest Associate Editor
Frontiers in Bioinformatics — Biological data science algorithms
Jun 2023
Guest Associate Editor
Horticulturae — Advances in Asparagus Production, Genomics and Breeding
Jun 2023
Guest Associate Editor
Frontiers in Plant Science — Asparagus genetic resources
Mar 2023
Guest Associate Editor
Plants — Advanced genetics methods for orphan crops
Oct 2021
Guest Associate Editor
Frontiers in Genetics
Jan 2021
Peer review

Journals reviewed for

AgronomyAnnals of Applied BiologyBMC GenomicsBMC Molecular Biology BMC Plant BiologyCytogenetic and Genome ResearchEcotoxicology Evolutionary BioinformaticsForestsFrontiers in Plant ScienceGene GeneticaGenesGenomeHorticultural Science & Biotechnology International Journal of Molecular SciencesJournal of the American Society for Horticultural Science Journal of Experimental BotanyJournal of Plant PhysiologyMicroorganisms Molecular Biology ReportsMoleculesPeerJPhytopathologia Mediterranea Plant MethodsPlant Molecular Biology ReporterPlant Physiology and Biochemistry PlantaPLOS ONEScientific ReportsWeed Research
More on Publons →
Contact

Get in touch

jose.die@uco.es