Genome

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Chart A

Chart B

Chart C

Chart D

Annotation


The following analysis corresponds to the genome annotation of the reference genome ASM4071231v1 (NCBI.

Summarize of features 
# A tibble: 7 × 2
  gene.type          n
  <chr>          <int>
1 protein-coding 30866
2 pseudogene      4591
3 lncRNA          2743
4 tRNA             592
5 snoRNA           415
6 rRNA             256
7 snRNA            129
Non-coding genes per chr : 
# A tibble: 71 × 3
   chromosome gene.type      n
   <chr>      <chr>      <int>
 1 11         pseudogene   544
 2 5          pseudogene   536
 3 1          pseudogene   458
 4 12         pseudogene   435
 5 6          pseudogene   417
 6 7          pseudogene   395
 7 5          lncRNA       359
 8 3          pseudogene   352
 9 4          pseudogene   323
10 2          pseudogene   309
# ℹ 61 more rows

Column

Data

In C. sativa, the average number of genes every 1 Mb over the whole genome is 55.


Distribution of genes every 1 Mb per chromosome :
chr n.genes
10 63
1 58
6 58
2 57
9 56
7 55
3 53
4 52
5 50
8 48

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Collection of packages, scripts and data related to our research on C. sativa at Dept. Genetics - ETSIAM, University of Córdoba.