Genome

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Chart A

Chart B

Chart C

Chart D

Annotation


The following analysis corresponds to the genome annotation of the reference genome Aspof.V1 (NCBI), submitted by the University of Georgia in 2017. Full genome sequences are also available in Bioconductor.

Summarize of features 
      feature      n
1        exon 292566
2         CDS 221765
3        mRNA  36763
4        gene  30689
5  cDNA_match  12568
6      region  11792
7     lnc_RNA   5760
8  transcript   2636
9  pseudogene   1548
10       tRNA    494
11      match     10
# A tibble: 10 × 3
# Groups:   seqname [10]
   seqname     feature     n
   <chr>       <chr>   <int>
 1 NC_033794.1 gene     3606
 2 NC_033795.1 gene     2276
 3 NC_033796.1 gene     3322
 4 NC_033797.1 gene     3479
 5 NC_033798.1 gene     3588
 6 NC_033799.1 gene     2026
 7 NC_033800.1 gene     3980
 8 NC_033801.1 gene     3554
 9 NC_033802.1 gene     1544
10 NC_033803.1 gene     1842

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Data

In A. officinalis, the average number of genes every 1 Mb over the whole genome is 31.


Distribution of genes every 1 Mb per chromosome :
chr n.genes
chr3 35
chr5 33
chr1 32
chr8 32
chr2 31
chr7 31
chr6 30
chr10 29
chr4 27
chr9 27

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Collection of packages, scripts and data related to our research on Asparagus officinalis at Dept. Genetics - ETSIAM, University of Córdoba.